PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198520.1
Common NameCsa_1G015080, LOC101211973
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 560aa    MW: 61190 Da    PI: 8.8034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.64e-17259308255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L ++veYI+ Lq
  Cucsa.198520.1 259 RSKHSATEQRRRSKINDRFQMLRGLIPHS----DQKRDKASFLLEVVEYIQFLQ 308
                     889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-25254329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-19256327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.437257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.06E-15259312No hitNo description
PfamPF000101.3E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRSTPQGS YLKTHDFLQP QERIRKASTK  60
EETDVERPPP PAPPPSVEHI LPGGIGTYSI SHVSYFDQRV VLPKPEGSVF TGVRSSSSAE  120
RNDENSNCSS FAAAGSGFTL WEESSVKKGK TGKENNVGDR PHEPRASTSQ WTASMERPSQ  180
SSSNNHHNTF SCLSSSQPTG TKNPTFMEML KSAKSTSQDE ELDDDGDFVI KKETSTANKG  240
GLRIKVDGNS SDQKANTPRS KHSATEQRRR SKINDRFQML RGLIPHSDQK RDKASFLLEV  300
VEYIQFLQEK VQKYEGSYQE WNHEMAKLVP LRNNQRSADV YNDQSRGINS GSVPALVLAA  360
KFIEKNSPLS PIVPGSAHNA VDSDTSSAST LKAVDHHSGR TSNAVQFPMS IPPKLSASTR  420
DGNVVPQPPK PLSSGMDHSS LRPEIRSCEA RCFNSDVAVA SEMQKEQDLT IEGGTINISS  480
VYSQGLLNTL THALQSSGVD LSQARISVQI ELGKRASRRA ISPASIVKDA NDMGMMHARV  540
SGTEDSERAT KKLKTTMKN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648566.10.0PREDICTED: transcription factor BIM1
SwissprotQ9LEZ31e-115BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A0A0LSI80.0A0A0A0LSI8_CUCSA; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-117bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]